Inria Research Director (Directeur de recherches)
Leader of the GenScale team
Twitter: @p_peterlongo
Mastodon: https://genomic.social/@pierrepeterlongo
Mail: pierre.peterlongo@inria.fr
Associate editor of the Interstices journal.
Main Research Topics
I’m designing models and algorithms for sequencing (NGS & TGS) data.
My interests mainly cover areas of metagenomics and biological information extraction from raw NGS dataset, for non-model species. I lead a project, SeqDigger, which aim is to index genomic datasets.
Publications
See dedicated web page
Current Ph.D. Students
- Khodor Hannoush (Alpaca project)
- Lucas Robidou (ANR SeqDigger)
- Garance Gourdel (ENS, co-directed with Tatiana Starikovskaya Talgo team, ENS)
Former (Official) Ph.D. Students & post-docs
- Antoine Limasset – Chargé de recherche CNRS, Lille BONSAI team
- Camille Marchet – Chargée de recherche CNRS, Lille BONSAI team
- Nicolas Maillet – Ingénieur de Recherche, Pasteur Paris, hub de bioinformatique et biostatistique
- Kévin da Silva – PhD defended in 2022, IRSET Rennes
- Téo Lemane – PhD defended in dec 2022. Now at Genoscope, CEA
Previous post-docs & engineers
- Céline le Beguec
- Raluca Uricaru
- Chloé Rioux
- Liviu Ciortuz
- Alexan Andrieux
On going projects
- SeqDigger: Search engine for genomic sequencing data
- ITN Alpaca: ALgorithms for PAngenome Computational Analysis
Previous projects
- Hydrogen: design new statistical and computational tools dedicated to comparative metagenomic
- Colib’read: Calling biological information from raw reads
- Inria Project Lab (IPL) Neuromarkers: Statistical and computational models of imaging and omics data for neurodegenerative diseases
Animation
Animator of one of the scientific axes of the GDR BIM group of research.
Former member of the SFBI board.
Editorial Committee of the Interstices journal.
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