I currently teach at University Rennes 1 (mainly for Master degree). I am mainly teaching algorithms for biological sequences in three teaching units for different publics (informaticians or bioinformaticians).
Before, I was involved in some teaching units about biological dynamical systems modeling and basic statitics with R. I organised bioinformatics training sessions for biologists (2009-2010). And during my PhD I was a temporary professor assistant (Monitorat) at the Engineer school INSA de Lyon (2005-2008).
Here are the subjects/lectures I am doing (or have done) :
Sequence algorithms in bioinformatics (sequence and genome alignment, dynamic programming, Blast-like heuristics, NGS: kmer indexing, read mapping and de novo assembly) |
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Introduction to bioinformatics (overwiew, databases, common tools) |
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Modelling of biological dynamical systems
(systems of differential equations, boolean networks) |
For bioinformatic licence and master students :
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Mathematics (analysis and linear algebra) |
For first year student of the engineering school INSA de Lyon (general cursus "prépa intégrée") in 2006 and 2007 (60 h per year) |
Statistics |
For third year biologist students of university Rennes 1, practical sessions with the software R, 2013-2017 (12 h per year) |