Inria Research Director (Directeur de recherches)
Habilitaded to Supervise Research (HdR) since 2016
Leader of the GenScale team
bluesky: pierrepeterlongo
Mail: pierre.peterlongo@inria.fr
Associate editor of the Interstices journal.
Main Research Topics
I’m designing models and algorithms for sequencing (NGS & TGS) data.
My interests mainly cover areas of metagenomics and biological information extraction from raw sequencing datasets, for non-model species. I lead two projects, SeqDigger and OmicFinder, which aim to index genomic datasets, with low environmental impacts.
Publications
See dedicated web page
Current (co-)supervised Ph.D. Students
- Alix Regnier, PEPR AgroDiv
- Léo Ackermann, Inria, co-supervised with Karel Břinda
- Victor Levallois, Défi Inria OmicFinder
- Khodor Hannoush Alpaca project, co-supervised with Camille Marchet
Former (Official) Ph.D. Students
- Antoine Limasset – Chargé de recherche CNRS, Lille BONSAI team
- Camille Marchet – Chargée de recherche CNRS, Lille BONSAI team
- Nicolas Maillet – Ingénieur de Recherche, Pasteur Paris, hub de bioinformatique et biostatistique
- Kévin da Silva – PhD defended in 2022, IRSET Rennes
- Téo Lemane – PhD defended in dec 2022. Now at Genoscope, CEA
- Lucas Robidou – PhD defended in 2023. (ANR SeqDigger). Now working at Bielefeld University, Genome Informatics with Jens Stoye
- Garance Gourdel – PhD defended in 2023.
Previous post-docs & engineers
- Céline le Beguec
- Raluca Uricaru
- Chloé Rioux
- Liviu Ciortuz
- Alexan Andrieux
On going projects
- OmicFinder: défi Inria. Querying the genomic treasure
- AgroDiv: PEPR. Caractérisation génomique et fonctionnelle de la diversité des plantes et animaux domestiques
- SeqDigger: ANR. Search engine for genomic sequencing data
- ITN Alpaca: ALgorithms for PAngenome Computational Analysis
- I am in charge of its (amazing) seminar series: https://alpaca-itn.eu/virtual-seminars
Previous projects
- Hydrogen: design new statistical and computational tools dedicated to comparative metagenomic
- Colib’read: Calling biological information from raw reads
- Inria Project Lab (IPL) Neuromarkers: Statistical and computational models of imaging and omics data for neurodegenerative diseases
Animation
Animator of one of the scientific axes of the GDR BIM group of research.
Former member of the SFBI board.
Regular interventions @chiche program
Editorial Committee of the Interstices journal.
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