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Long Reads RNA-seq de novo clustering – preprint
De novo Clustering of Gene Expressed Variants in Transcriptomic Long Reads Data Sets Preprint: biorxiv.org/content/early/ Tool: https://github.com/kamimrcht/CARNAC
discoSnp goes to RAD-Seq
We propose an adaptation of DiscoSnp for RadSeq data. Paper: biorxiv.org/content/early/ Tool: github.com/GATB/DiscoSnp/ Novelties: Clustering per locus Predictions of variants close to sequence extremities Order(s) of magnitude faster than Stack or IPyRAD. Predictions have high precision (up to 99.3% on simulated … Continuer la lecture
Bwise presentation – Sequencing, Finishing, and Analysis in the Future
Bwise was presented during the workshop « Sequencing, Finishing, and Analysis in the Future » Slides are available on my « presentation page »
NEW minimal perfect hash library BBHASH
A preprint for our minimal perfect hash library BBHash (formerly BooPHF) is up on arxiv (http://arxiv.org/abs/1702.03154 ). http://github.com/rizkg/BBHash
New Short Read Connector Release
A new release (1.0.1) of the RConnector tool (connecting reads from large datasets) is available here.
Slides from the colib’read workshop available
You may find all slides from the colib’read workshop on the program page.
Workshop Colib’Read – Program Online
The Colib’read workshop program is now online on this page http://gdr-bim.cnrs.fr/colibread/program/. We remind you that the attendance is free but ***registration is mandatory*** see website: http://gdr-bim.cnrs.fr/colibread/. Note that space is limited, and registration will be taken in the order received. … Continuer la lecture
Short Read Connector presentation
Short Read Connector was published and presented during the Prague Stringology Conference 2016. Slides available from my presentation page.
Simka presentation
Simka (de novo metagenomics comparisons) was presented during the « Pasteur Metagenomics Summer School« . Check the presentation page.
Workshop colib’read – November 7,8 2016
The colib’read group (http://colibread.inria.fr/) organises a workshop which aim is to present tools and results obtained for “calling biological information from raw reads”. The tools developed by the group are efficient both in terms of memory and computing time. Most … Continuer la lecture