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De novo Clustering of Gene Expressed Variants in Transcriptomic Long Reads Data Sets Preprint: biorxiv.org/content/early/ Tool: https://github.com/kamimrcht/CARNAC
We propose an adaptation of DiscoSnp for RadSeq data. Paper: biorxiv.org/content/early/ Tool: github.com/GATB/DiscoSnp/ Novelties: Clustering per locus Predictions of variants close to sequence extremities Order(s) of magnitude faster than Stack or IPyRAD. Predictions have high precision (up to 99.3% on simulated … Continuer la lecture
Bwise was presented during the workshop « Sequencing, Finishing, and Analysis in the Future » Slides are available on my « presentation page »
A preprint for our minimal perfect hash library BBHash (formerly BooPHF) is up on arxiv (http://arxiv.org/abs/1702.03154 ). http://github.com/rizkg/BBHash
A new release (1.0.1) of the RConnector tool (connecting reads from large datasets) is available here.
You may find all slides from the colib’read workshop on the program page.
The Colib’read workshop program is now online on this page http://gdr-bim.cnrs.fr/colibread/program/. We remind you that the attendance is free but ***registration is mandatory*** see website: http://gdr-bim.cnrs.fr/colibread/. Note that space is limited, and registration will be taken in the order received. … Continuer la lecture
Short Read Connector was published and presented during the Prague Stringology Conference 2016. Slides available from my presentation page.
Simka (de novo metagenomics comparisons) was presented during the « Pasteur Metagenomics Summer School« . Check the presentation page.
The colib’read group (http://colibread.inria.fr/) organises a workshop which aim is to present tools and results obtained for “calling biological information from raw reads”. The tools developed by the group are efficient both in terms of memory and computing time. Most … Continuer la lecture