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De novo Clustering of Gene Expressed Variants in Transcriptomic Long Reads Data Sets Preprint: biorxiv.org/content/early/ Tool: https://github.com/kamimrcht/CARNAC

We propose an adaptation of DiscoSnp for RadSeq data. Paper: biorxiv.org/content/early/ Tool: github.com/GATB/DiscoSnp/ Novelties: Clustering per locus Predictions of variants close to sequence extremities Order(s) of magnitude faster than Stack or IPyRAD. Predictions have high precision (up to 99.3% on simulated … Continuer la lecture →

Bwise was presented during the workshop « Sequencing, Finishing, and Analysis in the Future » Slides are available on my « presentation page »

A preprint for our minimal perfect hash library BBHash (formerly BooPHF) is up on arxiv (http://arxiv.org/abs/1702.03154  ). http://github.com/rizkg/BBHash   

A new release (1.0.1) of the RConnector tool (connecting reads from large datasets) is available here.

You may find all slides from the colib’read workshop on the program page.

Short Read Connector was published and presented during the Prague Stringology Conference 2016. Slides available from my presentation page.

Simka (de novo metagenomics comparisons) was presented during the « Pasteur Metagenomics Summer School« . Check the presentation page.